From orientation disordered to ordered—An ab initio simulation on ammonia borane phase transition within van der Waals corrections

In this work, we report a detailed theoretical investigation of the phase transition of ammonia borane (NH₃BH₃; AB), from a tetragonal I4mm ( ) phase with disordered orientation of hydrogen to an orthorhombic phase with Pmn2₁ ( ) symmetry, as a function of temperature based on Density Functional Theory calculations with semiempirical dispersion potential correction. We define a series of substructures with the NH₃BH₃ moiety always in C_3v symmetry and the partially occupied high temperature state can be described as a continuous transformation between these substructures. To understand the role of the van der Waals corrections to the physical properties, we use the empirical Grimme's dispersion potential correction (PBE‐D2). Both Perdew–Burke–Emzerhof (PBE) and PBE‐D2 functional yield almost the same energy sequence along the transition path. However, PBE‐D2 functional shows obvious advantage in describing the lattice parameters of AB. The rigid rotor harmonic oscillator approximation is used to compute the free energy and the entropies contribution along the transition pathway. With knowledge of free energy surfaces along rotations of the ? [NH₃] and ? [BH₃] groups, complete transformation paths are mapped out. The phase transition is found to follow the sequence of partially occupied tetragonal system (I4mm) of a mixture of states with monoclinic (Cc), (CM) and orthorhombic (Pmn2₁) symmetries to fully occupied quasitetragonal system (the intermediate phase, Pmn2₁) to fully occupied orthorhombic system (Pmn2₁). © 2014 Wiley Periodicals, Inc.     

Structure and Thermodynamics of Mg:Phosphate Interactions in Water: A Simulation Study

The association of Mg²⁺ and H₂PO₄^? in water can give insights into Mg:phosphate interactions in general, which are very widespread, but for which experimental data is surprisingly sparse. It is studied through molecular dynamics simulations (>100 ns) by using the polarizable AMOEBA force field, and the association free energy is computed for the first time. Explicit consideration of outer‐sphere and two types of inner‐sphere association provides considerable insight into the dynamics and thermodynamics of ion pairing. After careful assessment of the computational approximations, the agreement with experimental values indicates that the methodology can be extended to other inorganic and biological Mg:phosphate interactions in solution.     

致癌性卤代醌类消毒副产物造成 DNA 损伤的分子机理研究

卤代醌是一类卤代芳烃类环境污染物的致癌中间体,也是在饮用水中新发现的氯化消毒副产物。我们最近发现卤代醌和 H₂O₂ 或有机氢过氧化物体系可以不依赖过渡金属离子,而产生高活性的羟基/烷氧自由基和醌氧/醌碳自由基。目前尚不清楚这些卤代醌类致癌物和氢过氧化物共存能否诱导 DNA 产生氧化损伤和修饰,以及其潜在的分子机制是什么。我们的研究发现 DNA 在四氯-1,4-苯醌/H₂O₂体系中可被氧化产生 8-氧脱氧鸟苷、DNA 链断裂和三种甲基氧化产物,这些反应不依赖过渡金属离子,且由于卤代醌与 DNA 的嵌入作用而导致其氧化作用增强。其他卤代醌也观察到了类似的现象,而且通常比经典的 Fenton 体系更有效。我们进一步将研究从纯化的 DNA 扩展到了活细胞的基因组 DNA。同时还发现卤代醌和有机氢过氧化物(如叔丁基过氧化氢或在正常生理条件下产生的 13S-过氧羟基-9Z,11E-十八碳二烯酸(13-HPODE))共存时,可通过独特的醌氧自由基介导机制诱导 DNA 氧化生成致突变性更强的咪唑啉酮类产物 dIz。这些发现为解释普遍存在的卤代醌类致癌中间体和消毒副产物的潜在基因毒性、致突变性和致癌性提供了新思路。     

Influence of Pt Alloying on the Fluorescence of Fully Inorganic,Colloidal Gold Nanoclusters

Noble metal alloy nanoclusters (NCs) are interesting systems as the properties of two or more elements can be combined in one particle, leading to interesting fluorescence phenomena. However, previous studies have been exclusively performed on ligand-capped NCs from wet chemical synthesis. This makes it difficult to differentiate to which extent the fluorescence is affected by ligand-induced effects or the elemental composition of the metal core. In this work, we used laser fragmentation in liquids (LFL) to fabricate colloidal gold-rich bi-metallic AuPt NCs in the absence of organic ligands and demonstrate the suitability of this technique to produce molar fraction series of 1nm alloy NC. We found that photoluminescence of ligand-free NCs is not a phenomenon limited to Au. However, even minute amounts of Pt atoms in the AuPt NCs lead to quenching and red-shift of the fluorescence, which may be attributed to the altered surface charge density.     

Improvement of anti-inflammatory and anticancer activities of poly(lactic-co-glycolic acid)-sulfasalazine microparticle via density functional theory,molecular docking and ADMET analysis

In the present study, we assessed improvement of anti-inflammatory activity and drug delivery of sulfasalazine (SSZ) by the poly(lactic-co-glycolic acid), (PLGA), in H₂O and dichloromethane (DCM) environments via density functional theory (DFT), ADMET, and molecular docking. Our calculated results based on binding energy and thermodynamic parameter represents that the interaction between SSZ and PLGA in Complex A via double hydrogen bonds is stronger in comparison with Complex B. The analysis of Ultraviolet–visible (UV–VIS) spectra proved the interaction of SSZ with PLGA by time-dependent density functional theory (TDDFT). Infrared (IR) spectra demonstrated that the structure of PLGA was shifted in the presence of the SSZ. The interaction of SSZ with PLGA leads to an increase in dipole moment and higher solubility with more negative Gibbs free solvation energy (ΔG_solv) values and lowering of the energy gap (E_g). The obtained results by Molecular docking demonstrates that the interaction of SSZ via its carboxylate group with PLGA (complex A) had a strong interaction towards the binding pocket of the target and as a potential inhibitor of the COX-2, TNF-α, and IL-1 receptors at the binding site as compared with the complex B.     

Solvent free synthesis,characterization, DFT,cyclic voltammetry and biological assay of Cu(II), Hg(II) and UO2(II) – Schiff base complexes

A series of metal ion complexes was prepared in solid state from Cu(II), Hg(II) and UO₂(II) ions with 3-oxo-3-(2-(2-oxoindolin-3-ylidene)hydrazineyl)-N-phenylpropanamide (H₃L) ligand through solvent free synthesis methodology. The chemical formulae of the new compounds were estimated according to variable spectral and analytical investigations. The ligand exhibited a neutral or mononegative tetradentate mode of coordination towards the central ions inside the octahedral arrangement that proposed for the three complexes. The DFT/B3LYP method was applied under different basis sets (6-31G*or SDD) to optimize the structures of new compounds except the UO₂(II) complex. The computational data were investigated to verify the binding mode that suggested spectrally. Moreover, studies in solution regarding Cu(II) ion via cyclic voltammetry were performed in absence or presence of H₃L, to realize the significant effect of complex formation on the electrochemical manners of copper. The shifts in the potential peaks accompanied by the changes in the values of parameters correspond to kinetic and thermodynamic. Also, the solvation and kinetic characteristics for the cathodic and anodic potential of Cu(II) ion in absence or presence of H₃L at different scan rates, were estimated. Finally, the ligand and copper ion exhibited high affinity towards complexation in solution. Furthermore, the activity of the new compounds towards inhibiting microbes was studied against Staphylococcus aureus (G+) and Escherichia coli (G-) bacteria as well as Candida albicans (fungus) by determining the inhibition zone diameter. Also, both the antioxidant and cytotoxic activity of the isolated compounds were evaluated. Commonly, a remarkable antimicrobial and anticancer activity was appeared with UO₂(II) complex and the ligand. While, the antioxidant activity of all compounds appeared lower.     

Platinum Indolylphosphine Fluorido and Polyfluorido Complexes: An Interplay between Cyclometallation,Fluoride Migration,and Hydrogen Bonding

The reaction of [PtCl₂(COD)] (COD=1,5-cyclooctadiene) with diisopropyl-2-(3-methyl)indolylphosphine (iPr₂P(C₉H₈N)) led to the formation of the platinum(ii ) chlorido complexes, cis-[PtCl₂{iPr₂P(C₉H₈N)}₂] ( 1 ) and trans-[PtCl₂{iPr₂P(C₉H₈N)}₂] ( 2 ). The cis-complex 1 reacted with NEt₃ yielding the complex cis-[PtCl{κ²-(P,N)-iPr₂P(C₉H₇N)}{iPr₂P(C₉H₈N)}] ( 3 ) bearing a cyclometalated κ²-(P,N)-phosphine ligand, while the isomer 2 with a trans-configuration did not show any reactivity towards NEt₃. Treatment of 1 or 3 with (CH₃)₄NF (TMAF) resulted in the formation of the twofold cyclometalated complex cis-[Pt{κ²-(P,N)-iPr₂P(C₉H₇N)}₂] ( 4 ). The molecular structures of the complexes 1–4 were determined by single-crystal X-ray diffraction. The fluorido complex cis-[PtF{κ²-(P,N)-iPr₂P(C₉H₇N)}{iPr₂P(C₉H₈N)}] ⋅ (HF)₄ ( 5 ⋅ (HF)₄) was formed when complex 4 was treated with different hydrogen fluoride sources. The Pt(ii ) fluorido complex 5 ⋅ (HF)₄ exhibits intramolecular hydrogen bonding in its outer coordination sphere between the fluorido ligand and the NH group of the 3-methylindolyl moiety. In contrast to its chlorido analogue 3 , complex 5 ⋅ (HF)₄ reacted with CO or the ynamide 1-(2-phenylethynyl)-2-pyrrolidinone to yield the complexes trans-[Pt(CO){κ²-(P,C)-iPr₂P(C₉H₇NCO)}{iPr₂P(C₉H₈N)}][F(HF)₄] ( 7 ) and a complex, which we suggest to be cis-[Pt{C=C(Ph)OCN(C₃H₆)}{κ²-(P,N)-iPr₂P(C₉H₇N)}{iPr₂P(C₉H₈N)}][F(HF)₄] ( 9 ), respectively. The structure of 9 was assigned on the basis of DFT calculations as well as NMR and IR data. Hydrogen bonding of HF and NH to fluoride was proven to be crucial for the existence of 7 and 9 .     

无溶剂高度分散Ni/MCM-41催化剂的制备及其萘加氢性能

分别用机械研磨无溶剂法、添加柠檬酸无溶剂法制备了Ni/MCM-41催化剂,对所制催化剂进行了分析表征,探究其萘加氢反应性能并与常规浸渍法进行了对比。与常规浸渍法相比,机械研磨无溶剂法所制催化剂的物理性质相近,金属镍分散度和萘加氢性能略有提高;添加柠檬酸无溶剂法则显著提升了催化剂的分散度和萘加氢性能,金属镍分散度由6.9%大幅提高至67.9%,萘加氢性能提高了近1倍。通过红外光谱、紫外光谱和热重分析,提出了添加柠檬酸对无溶剂法制备催化剂性能的促进作用机制。     

Bimetallic CuCo Derived from Prussian Blue Analogue for Nonenzymatic Glucose Sensing

Bimetallic CuCo composites are prepared by calcinating copper hexacyanocobaltate precursor in N₂ atmosphere. The CuCo modified electrodes are fabricated for nonenzymatic glucose sensing in the alkaline electrolyte. The glucose can be directly electro-oxidized on the surface of the electrode catalyst mediated by the redox couples of Cu and Co. The optimal glucose sensor exhibits a high sensitivity (567 μA ⋅ mM⁻¹ ⋅ cm⁻²) in the range up to 825 μM with a detection limit of 3 μM and acceptable selectivity. The sensor can also be applied in serum samples. This work provides a facile and easily-scalable synthesis method of electrocatalysts for nonenzymatic glucose sensors.     

Capacitive Properties of the Binder‐Free Electrode Prepared from Carbon Derived from Cotton and Reduced Graphene Oxide

The binder‐free composite films of reduced graphene oxide (rGO ) and activated carbon derived from cotton (aCFC ) have been fabricated and used as electrodes for electrochemical capacitors (ECs ) to avoid the decrease of capacitive performance in traditional process caused by the additional binder. The optimal aCFC is prepared at 850 °C when the mass ratio of carbon and potassium hydroxide is 1 to 4. The optimal composite film prepared from the mass ratio of aCFC /GO =2/1 exhibits porous structure, and has a specific surface area of 849.6 m²•g⁻¹ and a total pore volume of 0.61 mL •g⁻¹. Based on the two‐electrode system testing in 6.0 mol/L KOH electrolyte, the optimal composite has specific capacitance of about 202 F•g⁻¹, 374 mF •cm⁻² and 116 F•cm⁻³ in terms of mass, area and volume, and shows excellent rate capability and good cyclic stability (91.7% retention of the initial capacitance after 5000 cycles). Furthermore, the assembled solid‐state ECs by using KOH /polyvinyl alcohol as electrolyte show good mechanical stability and capacitive performances after repeated bending cycles. It is proved that this method is effective to fabricate binder‐free electrodes for ECs and will open up a novel route for the reuse of waste cotton.